Major Publications
(Original research paper(s)/review(s), including preprint(s))
Malinda RR, Takizawa S, Koyama A, Niizato T, Habe H, Kawashima H. Speed-controlled visual stimuli modulate fish collective dynamics. bioRxiv, https://doi.org/10.64898/2025.12.05.692523.
Kawashima H, Malinda RR, Saeko Takizawa. Modeling and analysis of fish interaction networks under projected visual stimuli. In-press, Proceedings of AROB-ISBC 2026, Oita, Japan.
Seko K, Kinoshita H, Malinda RR, Kawashima H. Detection and Identification of Penguins Using Appearance and Motion Features. In-press, Proceedings of AROB-ISBC 2026, Oita, Japan.
Ohashi K, Hiraoka R, Kamata K, Malinda RR, Kawashima H, Habe H, Niizato T (2025). Visual manipulation of group behavior in Plecoglossus altivelis via projected dot patterns. In-press, Proceedings of SWARM2025, Germany. [Manuscript peer-reviewed accepted version] [Abstract]
Malinda RR (2025). Animal behavioural ecology research through AI: a concise overview of recent progress. Jxiv Preprint [Preprint version]
Malinda RR, Mishra D (2025). Genomic data, effective communication through visualization. Acta Biologica Szedegiensis. DOI: 10.14232/abs.2024.02.88-91. [Peer-reviewed version] [Preprint version]
Malinda RR (2023). Biological data studies, scale-up the potential with machine learning. European Journal of Human Genetics, 31, 619–620 (2023). DOI: 10.1038/s41431-023-01361-5. [Peer-reviewed version] [PubMed]
Malinda RR (2022). Clinical management approaches in Bardet-Biedl syndrome. European Journal of Human Genetics, 30, 1203-1204 (2022). DOI: 10.038/s41431-022-01187-7. [Peer-reviewed version] [PubMed]
Malinda RR, Zeeberg K, Sharki PC, Ludwig MQ, Pedersen LB, Christensen ST, Pedersen SF (2020). TGFβ signaling increases net acid extrusion, proliferation and invasion in Panc-1 pancreatic cancer cells: SMAD4 dependence and link to merlin/NF2 signaling. Frontiers in Oncology, Front. Oncol. 2020, DOI:10.3389/fonc.2020.00687. [Peer-reviewed version] [PubMed]
Malinda RR (2016). Cellular mechanisms regulating ciliary disassembly and EMT: roles of ion transport and implications for cancer. PhD thesis, Faculty of Science, University of Copenhagen, Denmark. [Read here]
Nielsen BS*, Malinda RR*, Schmid FM, Pedersen SF, Christensen ST, Pedersen LB (2015). PDGFRβ and oncogenic mutant PDGFRα D842V promote disassembly of primary cilia through PLCγ and AURKA dependent mechanism. Journal of Cell Science, J Cell Sci. 2015, Oct 1;128(19):3543-9 (*authors contributed equally). [Peer-reviewed version] [PubMed]
Nielsen BS, Schmid F, Malinda RR, Christensen ST and Pedersen LB (2015). Expression of the oncogenic constitutive active Platelet-derived growth factor receptor alpha D842V mutant induces loss of cilia. Cilia 2015, 4(Suppl 1): P63. [Proceeding abstract] [PubMed]
Publications (all)
(Including science communication article(s), preprint(s), proceeding paper(s), and submission ready article(s))
Malinda RR (2024). Geospatial analysis of disease transmission and genetic diversity. Jxiv Preprint. DOI: 10.51094/jxiv.779. [Preprint version]
Srivastava A, Mahilkar S, Upadhyaya CP, Mishra CP, Malinda RR, Sonkar SC, Koner BC (2024). Alkhumra Hemorrhagic Fever Virus (AHFV): A Concise Overview. Yale Journal of Biology and Medicine. Dec 19;97(4):505-514. DOI: 10.59249/QSPC8835. [Peer-reviewed version] [PubMed]
Malinda RR, Mishra D, Bajaj R, Khaliduzzaman A (2024). Exploring the Current Dynamics of Preprints. Current Medical Research and Opinion, 40(6), 1047–1051. DOI: 10.1080/03007995.2024.2351144. [Peer-reviewed version] [PubMed] [Preprint version]
Puebla I, Cabral CJV, Đorđević A, Malinda RR, Moglad E, Shafiei SS, Yona C (2022). ASAPbio Preprint event toolkit: A 10-step guide to organizing your preprint event. Zenodo/doi.org/10.5281/zenodo.7433091. [Peer-reviewed version]
Malinda RR (2021). When sperm can’t modify their proteins, their motors stop swimming. Massive Science, April 20, 2021. [Science communication article]
Malinda RR (2021). Coral larvae swim more slowly in dim light. Massive Science, February 20, 2021. [Science communication article]
Malinda RR (2021). Researchers uncover gut bacteria that can break down cholesterol. Massive Science, January 07, 2021. [Science communication article]
Kumar M, Kumari T, Joshi J, Chhimpa S, John PJ, Malinda RR, Joshi BS (2020). Synthesis, characterisation of transition metal complexes of triazine-3(2H)-thione and their in-vitro evaluation of antibacterial agents. Rasayan Journal of Chemistry, RJC, Vol. 13, No. 3, 2020.
Malinda RR (2020). Microscopic physical forces shape developing embryos. Massive Science, October 26, 2020. [Science communication article]
Malinda RR (2020). A simple Twitter demonstration shows why mask-wearing is so important. Massive Science, July 22, 2020. [Science communication article]
Malinda RR (2020). A bacterium that causes food-borne illness grows flagella under stressful conditions. Massive Science, June 25, 2020. [Science communication article]
Malinda RR (2018). Blending in to stand out. Nature India, Indigenus/2018/06. [Nature India]